YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194432120, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVTQLKRY DARPINWGKW FLIGIGMLVS AFILLVPMIY IFVQAFSKGL MPVLQNLADP  60
   61 DMLHAIWLTV MIALIAVPVN LVFGILLAWL VTRFNFPGRQ LLLTLLDIPF AVSPVVAGLV 120
  121 YLLFYGSNGP LGGWLDEHNL QIMFSWPGMV LVTIFVTCPF VVRELVPVML SQGSQEDEAA 180
  181 ILLGASGWQM FRRVTLPNIR WALLYGVVLT NARAIGEFGA VSVISGSIRG ETLSLPLQIE 240
  241 LLEQDYNTVG SFTAAALLTL MAIITLFLKS MLQWRLENQE KRAQQEEHHE H

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	43	0.94
Non-Cytoplasmic	44	64	0.94
Transmembrane Helix	65	91	0.88
Cytoplasmic	92	101	0.90
Transmembrane Helix	102	125	0.91
Non-Cytoplasmic	126	141	0.95
Transmembrane Helix	142	162	0.94
Cytoplasmic	163	200	0.92
Transmembrane Helix	201	221	0.83
Non-Cytoplasmic	222	248	0.89
Transmembrane Helix	249	272	0.85
Cytoplasmic	273	291	0.97