YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83364164, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	287	0.69
Transmembrane Helix	288	309	0.64
Non-Cytoplasmic	310	317	0.78
Transmembrane Helix	318	339	0.90
Cytoplasmic	340	356	0.88
Transmembrane Helix	357	380	0.92
Non-Cytoplasmic	381	387	0.84
Transmembrane Helix	388	411	0.87
Cytoplasmic	412	420	0.81
Transmembrane Helix	421	441	0.95
Non-Cytoplasmic	442	446	0.83
Transmembrane Helix	447	467	0.92
Cytoplasmic	468	479	0.85
Transmembrane Helix	480	501	0.78
Non-Cytoplasmic	502	523	0.66
Transmembrane Helix	524	544	0.50
Cytoplasmic	545	559	0.82
Transmembrane Helix	560	583	0.87
Non-Cytoplasmic	584	590	0.70
Transmembrane Helix	591	611	0.88
Cytoplasmic	612	630	0.73
Transmembrane Helix	631	650	0.93
Non-Cytoplasmic	651	656	0.62
Transmembrane Helix	657	677	0.80
Cytoplasmic	678	686	0.84
Transmembrane Helix	687	708	0.91
Non-Cytoplasmic	709	716	0.75
Transmembrane Helix	717	738	0.84
Cytoplasmic	739	770	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLRKGTRA RHDLRHVGIA RNRHDLLGLA PVGFEIVVGD GPVLRHAVIG PEPEIRRMQA  60
   61 RRLGEPAVGA SAESDGEVPR LLGVGGVGVA VGDGRIPPFL QLPVVCRMPT PFQDEDPPPR 120
  121 LAQQPMQEER GAEARAHNNH IEMFAGDALG RSQVHKIHLL VIACHLGASG GKLSTPAPVD 180
  181 RQGFAGPVCN RSMIVLMQRG GAARTGSGRK LRVPKTARLH VWELCGPLGL RPQAAGRPVP 240
  241 RRSAAEPREK RLDAILSDCL RRAGVPVSGQ HLFDPPQGSL RTTVGRGAAA IAASQAVMVA 300
  301 TQMGSVVILS RLLAPEEFGL VAMCAPVLAL IGMLQDFGLV QATVQKPDLR HEEVNFLFWV 360
  361 NVALSAALAL LLLLISPLVA LFYQEPRIGP LIAAMALIVA ANGLGAQHAA LLNRRMEYGR 420
  421 IAIIGVVGAV AGLGTATAWA LVQPSYWALF GGQLAGTLLP TGLMWLASRW RPGRPGGAQG 480
  481 GRALIGFGAG ITGFNFANFF ARNLDNVLIG RVWGGAQLGL YDRAYKLLLM PLNQVANPLS 540
  541 KVMIPALSRM LDEPDRYRSA YLRVLTLSLL LVLPGVAAAT AMADLLIPFA LGAHWAGSAP 600
  601 IFMALGFAGL LQPLNNPAGW LFISQGRSTE FMYWGFATAL FAVVAFVLGL PYGALGVAIA 660
  661 YAISEYLKTP VLWLYIGRRG AVRARDVTLA CGPLVLAGHA ALGVVWLARP WLAEAPVAAL 720
  721 LEGALLAYLV TVLLIAPFPQ GRAVLAEAGS LLRGGLSKLR SRTIRRATSG