YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69163170, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESISNFIT TMTQYPWVFV AISFIFAATI GSFLNVVIHR LPVMMKREWQ SECNFYLNEY  60
   61 HPDIVKQVGT ERLQKAIDPF PEKYNLVVPG SACPKCKANI KPWHNLPILG WLMLKGKCAD 120
  121 CKTGISSRYP IIELLTGVLI AALAWHFGPT WQFVYASILT FVLVALTGID LDEMLLPDQL 180
  181 TLPILWLGLI INLKGIYTSP EDAIIGAAAG YLSLWSVFWL FKLVTGKEGM GYGDFKLLAV 240
  241 FGAWLGWQML PLIILLSSLV GAVVGITMIM AKQLNKGNPI PFGPYIAAAG WIALVWGHDI 300
  301 LNWYLSTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.95
Transmembrane Helix	17	38	0.95
Cytoplasmic	39	133	0.94
Transmembrane Helix	134	168	0.69
Non-Cytoplasmic	169	174	0.45
Transmembrane Helix	175	197	0.71
Cytoplasmic	198	202	0.53
Transmembrane Helix	203	225	0.85
Non-Cytoplasmic	226	243	0.61
Transmembrane Helix	244	270	0.83
Cytoplasmic	271	279	0.62
Transmembrane Helix	280	300	0.87
Non-Cytoplasmic	301	308	0.64