YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69953648, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	282	0.96
Transmembrane Helix	283	306	0.88
Non-Cytoplasmic	307	322	0.70
Transmembrane Helix	323	344	0.75
Cytoplasmic	345	354	0.57
Transmembrane Helix	355	378	0.81
Non-Cytoplasmic	379	398	0.84
Transmembrane Helix	399	420	0.88
Cytoplasmic	421	429	0.81
Transmembrane Helix	430	453	0.85
Non-Cytoplasmic	454	460	0.81
Transmembrane Helix	461	479	0.97
Cytoplasmic	480	516	0.94
Transmembrane Helix	517	538	0.85
Non-Cytoplasmic	539	671	0.87
Transmembrane Helix	672	694	0.91
Cytoplasmic	695	703	0.82
Transmembrane Helix	704	725	0.90
Non-Cytoplasmic	726	732	0.83
Transmembrane Helix	733	751	0.97
Cytoplasmic	752	770	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQFHCVTV GNPNAGKSTL FNALTGASQQ VGNWSGVTVE KKTGKLNYSG TDIFLTDLPG  60
   61 IYDLLPAGNS CDCSLDEQIA QAYLSNQQVD AIINLVDATN VERHLYLTTQ LRELGIPIIV 120
  121 VINKIDAAKK LGININVDDM SARLGCPVVA ICSRSKADVE QLQAELMSLL EKGDSTKSLM 180
  181 LQYHTDIEAS VTALQMQNDS QGLTALSRGQ ALAILANSHG NGCGTSEVQL HDTVKQCTLR 240
  241 VEQAGEDIDI MIATTRYDFV QQVFEASVNQ GKHISATDRL DKVVLHPVLG IPIFLFVMYL 300
  301 MFLFSINVGN SFIDFFDITA GAIFVDHFGV LLSSMGSPDW LVTILAGGVG QGIQTVATFI 360
  361 PVVAALFLAL SVLEASGYMA RAAFVVDGLM RRIGLPGKAF VPMIVGFGCS VPAIMATRTL 420
  421 GSERERIVTG MMAPFMSCSA RLPVYALFAA AFFPQSGQNL VFLLYIIGIF AAIGTGLLLR 480
  481 KTVLPGTSSA VVMELPSYEM PKSKAVFSRT TKRTKSFIMG AGKTIIIVVT LLNFVNAIGT 540
  541 DGSFGHEDSK ESLLSVASQQ ITPLFSPMGI EQDNWAATVG IITGIFAKEA VVGTLNSLYS 600
  601 TSAGDDEELL SIWDSVKVGL ATIPTNLLGI EPGDPLSIAI AGITDLDEAA MELSVDTSTF 660
  661 SALQTGFKSQ IAAFSYLLFI LLYTPCVAAM GALVHEFGAK WARFAAIWTF SLAYGSATVV 720
  721 YQGATFNQHP VQSASWISFF VMALVVFYFW LNKKGRKAQQ IIPGIRIVTE