YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_SHEFN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATGEEMTQ QSYIQHHLTN LTVGEGFWTW NIDSLLFSVG LGMLFLWLFY RAGKKATTGV  60
   61 PGKFQCFVEI IVEFVDSSVK ETFHGRNPVI APLALTIFVW IFMMNFMDMI PVDWLPSLAL 120
  121 LAGVPYLKVV PTTDVNITFS LALGVFVLII YYSIKVKGVS GFVKELTFQP FNHWAMIPVN 180
  181 LLLETVTLVA KPISLALRLF GNLYAGELIF ILIALMYGSN VALSALGVGL QLGWLIFHIL 240
  241 VITLQAFIFM MLTIVYLSMA HEDH

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.91
Transmembrane Helix	29	50	0.90
Cytoplasmic	51	87	0.90
Transmembrane Helix	88	107	0.85
Non-Cytoplasmic	108	134	0.51
Transmembrane Helix	135	154	0.91
Cytoplasmic	155	202	0.46
Transmembrane Helix	203	226	0.80
Non-Cytoplasmic	227	234	0.59
Transmembrane Helix	235	257	0.93
Cytoplasmic	258	264	0.66