YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69164291, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.75
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	53	0.67
Transmembrane Helix	54	72	0.89
Cytoplasmic	73	79	0.65
Transmembrane Helix	80	100	0.92
Non-Cytoplasmic	101	117	0.64
Transmembrane Helix	118	134	0.70
Cytoplasmic	135	143	0.71
Transmembrane Helix	144	162	0.86
Non-Cytoplasmic	163	183	0.62
Transmembrane Helix	184	207	0.90
Cytoplasmic	208	227	0.77
Transmembrane Helix	228	247	0.76
Non-Cytoplasmic	248	276	0.87
Transmembrane Helix	277	299	0.87
Cytoplasmic	300	309	0.84
Transmembrane Helix	310	334	0.81
Non-Cytoplasmic	335	342	0.75
Transmembrane Helix	343	365	0.89
Cytoplasmic	366	373	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKTVNNHA YQKSFWQKIH LDVPLLIGIV ILMSFGLFVI YSASGEDPAM MERQLVRMAL  60
   61 SLGVMFCFAQ INPEILRRWA LPIYLAGVAL LIGVELFGTI NKGAQRWLNL GFMEFQPSEL 120
  121 IKLAFPITMA WYISKFPLPP KKRYLAGGVI ILLIPTLLIA KQPDLGTSIL VAASGVFVLF 180
  181 LSGMSWLIVG GFVTAILIFL PVLWFFLMHD YQRTRVLTLF NPEQDPLGAG YHIIQSKIAI 240
  241 GSGGLWGKGW LDGTQSQLEF LPERHTDFIF AVIGEEFGLI GSLVLLAMYL FVIGRGLVIA 300
  301 SRAQTSFARL LAGSITLTFF VYVFVNIGMV SGILPVVGVP LPLISYGGTS MLTLMTGFGI 360
  361 LMSIHTHRRF VDR