YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69951915, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERLFIRLG KSSEHPCSWL VWSEQEQEII ASGELSDAAS LSTLAERAGN RPVDVLVPAA  60
   61 NMTLTQIMLP EKGQRQALKA LPYMLEESLA TNVDNMHFVV GPREGEQLNV AAVAHEQMQI 120
  121 WLEWLHHAGL KVKRIVPDCL ALPLEQCRWA AMSVGSEYLI RTSEGSGVSM PKAWSAFALP 180
  181 KLLIAAKPND NESISVASYS DDIVFEGVDI NNKPLDLPMM VLAKGILNAP INLLSGIYKP 240
  241 KHEYSKQLLT WKNAAIVVMI AIVLALANKG IAIHQLNNQT TELQAQSEMI FKQAVPGVNR 300
  301 IVNMRSQMGS ELRSMQGQGG GAVFFEMLDG LKPAFSKVPE LKPNTLRYEA NRNELRMQVT 360
  361 AKTYGQIDTF KELVSKDYLL EGGAMNSSEE SVTSTLTLRN K

Type	Start	End	Confidence
Cytoplasmic	1	248	0.56
Transmembrane Helix	249	272	0.59
Non-Cytoplasmic	273	401	0.91