YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69951558, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALTTKTST VPIQSVYTQD AANSAVINMC QQAEQYGQSK VIKSHLESFG LAIFAGAFIA  60
   61 LAFVFYITVT TGTIGPWGQV RFIGGLAFSL GLILVVICGG ELFTSTVLSS VAWAQKRVNT 120
  121 KDLLMCWTRV YVGNFIGAML MLLLILGAKM HLLNGGQWGL NALNIAQHKI HHDWSQAFIL 180
  181 GILCNVLVCL GVWMTFSSKD VLTKAFLLML PVAMFVSSGF EHSIANLFMV PLGIMLQQFA 240
  241 SADFFNAIGV PASQFADITI THFLFNNLIP VTLGNIVGGA LFVGLAYLMI ERLKHSNADH 300
  301 TAPMVLATLA LAECIPAIDA HISNQAMSNQ AISNKSASNQ SNSDKPIPNV PISSRTMVSQ 360
  361 SATGFSKSHS VLTQIHHESN LTPSLKTNGR TAMPKSIINL TVSELMEATP FTLSPELSIH 420
  421 EGLMQLTAAQ ERGAPVVDKQ NRLLGFVSQQ DLLRCLWSEE YNKHINSHVA DLMQTQVMTV 480
  481 SGNDKIADLV ELMVVDREKL FPVTASGMYT GSRFMSYEER LRHASANKPS SFPVVNEGLL 540
  541 LGVITREQIA TKICSVMG

Type	Start	End	Confidence
Cytoplasmic	1	48	0.98
Transmembrane Helix	49	69	0.95
Non-Cytoplasmic	70	85	0.79
Transmembrane Helix	86	109	0.89
Cytoplasmic	110	129	0.83
Transmembrane Helix	130	152	0.90
Non-Cytoplasmic	153	173	0.97
Transmembrane Helix	174	196	0.90
Cytoplasmic	197	204	0.87
Transmembrane Helix	205	225	0.88
Non-Cytoplasmic	226	267	0.81
Transmembrane Helix	268	290	0.90
Cytoplasmic	291	300	0.82
Transmembrane Helix	301	322	0.61
Non-Cytoplasmic	323	558	0.73