YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69950907, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.93
Transmembrane Helix	7	33	0.85
Non-Cytoplasmic	34	56	0.89
Transmembrane Helix	57	76	0.95
Cytoplasmic	77	86	0.87
Transmembrane Helix	87	108	0.93
Non-Cytoplasmic	109	113	0.82
Transmembrane Helix	114	132	0.95
Cytoplasmic	133	139	0.87
Transmembrane Helix	140	163	0.90
Non-Cytoplasmic	164	171	0.83
Transmembrane Helix	172	194	0.93
Cytoplasmic	195	211	0.93
Transmembrane Helix	212	234	0.88
Non-Cytoplasmic	235	240	0.77
Transmembrane Helix	241	261	0.92
Cytoplasmic	262	308	0.95
Transmembrane Helix	309	328	0.95
Non-Cytoplasmic	329	334	0.87
Transmembrane Helix	335	359	0.85
Cytoplasmic	360	367	0.75
Transmembrane Helix	368	387	0.90
Non-Cytoplasmic	388	393	0.66
Transmembrane Helix	394	419	0.74
Cytoplasmic	420	430	0.61
Transmembrane Helix	431	449	0.92
Non-Cytoplasmic	450	465	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIATLFIAL FICMMIGMPI AIALGFSSML TILLYSNDSL ASIVLKLYES TSEHYTLLAI  60
   61 PFFILSSAFL STGGVARRII DFAMDSVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG 120
  121 SIVIVGMVRA GYPEKFAAGV ITTSGTLGIL IPPSIVMLVY AAATEVSAAR MFMAGLIPGL 180
  181 MMGCILMLAI YIVARIKKLP SRPFPGIKAL SISSAKAMGG LALILIVLGS IYGGVASPTE 240
  241 AAAVACVYAY FIAVFGYRDI GPLKNVAWRN KQESLIGASL RNIGHMLLAV IKTPTDKEIR 300
  301 HVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHIIAETI VGFGLPAWGF LIIVNLLLLA 360
  361 AGNFMEPSAI LLIMAPILFP IATQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTAGIT 420
  421 GKSMGWVIQS CLPWLVLLLG FLMLITYIPQ ISLFLPEYID KLNGY