YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114564818, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	34	0.99
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	209	0.99
Transmembrane Helix	210	237	0.86
Cytoplasmic	238	255	0.84
Transmembrane Helix	256	280	0.83
Non-Cytoplasmic	281	289	0.80
Transmembrane Helix	290	310	0.96
Cytoplasmic	311	330	0.93
Transmembrane Helix	331	354	0.90
Non-Cytoplasmic	355	372	0.78
Transmembrane Helix	373	394	0.91
Cytoplasmic	395	406	0.83
Transmembrane Helix	407	428	0.89
Non-Cytoplasmic	429	434	0.72
Transmembrane Helix	435	451	0.91
Cytoplasmic	452	464	0.81
Transmembrane Helix	465	485	0.92
Non-Cytoplasmic	486	628	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKRQLTIMK KLVAICLTSL LMMSSILLAP AAHSANVLSN KFSFLSSEPE LMKVNDAFVF  60
   61 DYQQQGNQLK INFVIAEGYY LYRDKLQFSV DGAVIGDIEL PHGKNHHDEY FGDQEVFYSF 120
  121 VEIPIAFKEA QADAVFHVTF MGCAEGTLCY PPTKHDVTLT AIEANDGTLS SKKVIGAPDD 180
  181 AQASTTATDA PAAPITQQDT LNQMLQNDSL LWTLVIFFGL GIGLALTPCV FPMYPILSGI 240
  241 IVGQGKKLST AKAFTLSMAY VQGMAITYSL LGLVVASAGL KFQAALQHPA ILIFLAVMFV 300
  301 LLSLSMFGMY DLKLPSKWQE KMNSMSNNQK GGNLIGVFMM GVISGLVASP CTTAPLSGVL 360
  361 IYVAQSGDLL QGFLALYVLS MGMGLPLLVI GTSGGKILPR AGAWMDIIKT IFGFLLISVS 420
  421 IVMIGRIWPG LVSDLLWSLW AICLVAYLMH QNRLSEFNWK QSTRGVFLLL ALMASFSYGF 480
  481 QAIMTGFGHK TPDITQAGVE GKTQNKENHF IRIKSLEDLE VELDKASISG KTVMLDLYAD 540
  541 WCVACKEFEA ITFKNKDVAT RMSQMVLLQA DVTASDDIDI TLLEHYGVLG LPTLLMFNSD 600
  601 GKQREDLRVT GFMGPKDFAA HLDILLAK