YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYOE2_SHEFN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.97
Transmembrane Helix	29	49	0.95
Non-Cytoplasmic	50	54	0.83
Transmembrane Helix	55	75	0.96
Cytoplasmic	76	95	0.98
Transmembrane Helix	96	117	0.94
Non-Cytoplasmic	118	122	0.81
Transmembrane Helix	123	143	0.92
Cytoplasmic	144	149	0.91
Transmembrane Helix	150	169	0.94
Non-Cytoplasmic	170	175	0.80
Transmembrane Helix	176	195	0.96
Cytoplasmic	196	218	0.89
Transmembrane Helix	219	241	0.82
Non-Cytoplasmic	242	244	0.58
Transmembrane Helix	245	264	0.74
Cytoplasmic	265	280	0.64
Transmembrane Helix	281	300	0.95
Non-Cytoplasmic	301	303	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPLTISQV QPKITLQWRA YFEMTKPKVV ALMLLTVLVG MCLSVPGIVP LQPLVAGMAG  60
   61 IAMMAGSAAA FNHLIDRKID GLMARTYNRP LPKGKISTTK AVTFAVSLGS LGFVVLYTLV 120
  121 NPLTAWLTFA SLIGYALVYT AYLKRATSQN IVIGGLAGAM PPLLGWTAIT NELHGYALLL 180
  181 VIIIFTWTPP HFWALAIHRR KEYAKVDIPM LPVTHGVEFT KTCILLYTIL LAIACLLPVL 240
  241 VGMCGPIYLV GSTVLSCGFI YKAWQLKFHD YPELSMQVFK FSIYHLMVLF IVLLVDHYFW 300
  301 VNA