YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114332698, gi...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKLKWWQR FLPRSAFSQT VLLIGSLLLI NQLVSYWSVA VYFIKPSYEQ INQLIARQIN  60
   61 ILFVDGVDVG REHLTMVDAL NAKVRDDGMT IYNQKQAQEA GLGQATYYSF LSEQMSVYLG 120
  121 GEAEVRFSQG EKLDVWIKPP QAPTLWIKVP LTGINESDLS PLTLYLLVIG GLSVAGGWLF 180
  181 ARRQNRPLKR LQKAAVAVSQ GDFPPTLPLS GSTEIVEVTH AFNQMAHSMK QLEQDRALLM 240
  241 AGISHDLRTP LTRIRLASEM MVEDDQYLKE GIVTDIEDMD AIINQFIAYI RNDREGVREP 300
  301 DQINRLIQEI SQQESHREET IELSLADCPD VPMNSVAIKR VLSNLVENAF RYGNGWIKIS 360
  361 SYHQGNAVCF SVEDNGPGIN EAEVEHLFQP FTQGDTARGS IGSGLGLAII KRIIDRHHGK 420
  421 VKLSNRPQGG LKAQVWLPLI DKNLYN

Type	Start	End	Confidence
Cytoplasmic	1	19	0.50
Transmembrane Helix	20	36	0.55
Non-Cytoplasmic	37	161	0.96
Transmembrane Helix	162	181	0.89
Cytoplasmic	182	446	0.89