YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83368517, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.70
Transmembrane Helix	130	149	0.52
Non-Cytoplasmic	150	285	0.57
Transmembrane Helix	286	307	0.86
Cytoplasmic	308	314	0.56
Transmembrane Helix	315	345	0.69
Non-Cytoplasmic	346	356	0.59
Transmembrane Helix	357	379	0.88
Cytoplasmic	380	386	0.63
Transmembrane Helix	387	405	0.93
Non-Cytoplasmic	406	412	0.69
Transmembrane Helix	413	432	0.91
Cytoplasmic	433	440	0.65
Transmembrane Helix	441	462	0.83
Non-Cytoplasmic	463	529	0.53
Transmembrane Helix	530	553	0.69
Cytoplasmic	554	560	0.59
Transmembrane Helix	561	580	0.92
Non-Cytoplasmic	581	587	0.49
Transmembrane Helix	588	608	0.91
Cytoplasmic	609	628	0.49
Transmembrane Helix	629	652	0.88
Non-Cytoplasmic	653	763	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDERRSGVRR LTRNVPSACR CPRVGVDRSS AGCEHVRPWR GPPGNAALGG VAAGRVAVGV  60
   61 TRGNGVEQRA QRREGRRVER MADPGMVDRA VNQPRCLQDP QMLRDRRLRR PDLIHDVPPM 120
  121 QPGIASRTAL ISTRAGCAIA LAIAATRSVS MGVACYGVFR SNIPNPFIAV ARYMLIAGQR 180
  181 CRRPFSGCFE LRHRAAEPDF ARRRDRRRED RAAWHRSAVG LRAGHSSGPG CDPRVAPPAA 240
  241 DPPDNRSEQT EHPPAGRRPR PGRNGTFMIS FSTYRQDWLG NVRADLLSGL VVALALIPEA 300
  301 IAFSIIAGVD PKVGLYASFS IAVITAIAGG RPGMISAATA ATAVLMVTLV RDHGLQYLLA 360
  361 ATVLAGLIQI GAGFLRLGFV MRYVSRSVMT GFVNALAILI FMAQLPELDP RTVPPLTYLL 420
  421 VAGGLAIIYL FPRITRAVPS PLVTIIVLTT LTLALGLDVR TVGDMGALPD TLPVFLIPDI 480
  481 PLTFETLQII LPYSIAVAVV GLLESLMTQN IVDELTDTRS NRNQECIGQG LANTATGFIG 540
  541 GMAGCAMIGQ SMINVKSGGR GRLSCFVAGV FLLILVVGLG DLVSRIPMAA LVAIMIMVSI 600
  601 GTFSWSSMKA LRTHPRSSSV VMLATVATVV WTHNLAIGVL VGVLLSGIFF AAKIAQLFRI 660
  661 TSELSKDGRE RIYRVEGQMF YASVEDFMAA FDFREALDRV VIDVSRAHIW DISSVQALDM 720
  721 AVLKFRREGA EVRIVGMNEA SETMVDRLAI HDKPGAMDRL TAH