YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83368440, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQIETFYDV MRRQGITRRS FMKYCSLTAA ALGLGPSFVP KIAHAMETKP RTPVIWVHGL  60
   61 ECTCCSESFI RAAHPLAKDV VLSMISLDYD DTLMAAAGHQ AEEALMDTIE KYKGNYILAV 120
  121 EGNPPLNEDG MYCIIGGKPF VEQLRMAAEH AKAIISWGAC ASYGCVQAAA PNPTRAVPVH 180
  181 KVILDKPIIK VPGCPPIAEV MTGVITYMLT FDRLPELDRQ GRPAMFYSQR IHDKCYRRPH 240
  241 FDAGQFVEQW DDDYAKKGYC LYKMGCKGPT TYNACSTVRW NEGVSFPIQS GHGCIGCSED 300
  301 GFWDQGSFYD RVTNIKQFGV EANADAIGLT AVGVVGAGVA LHVAATALKA AQRKSQTARD 360
  361 KNNEKTEA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.71
Transmembrane Helix	21	40	0.68
Non-Cytoplasmic	41	325	0.95
Transmembrane Helix	326	346	0.54
Cytoplasmic	347	368	0.52