YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83368401, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	247	0.98
Transmembrane Helix	248	269	0.93
Non-Cytoplasmic	270	302	0.89
Transmembrane Helix	303	324	0.90
Cytoplasmic	325	332	0.79
Transmembrane Helix	333	352	0.94
Non-Cytoplasmic	353	357	0.74
Transmembrane Helix	358	378	0.93
Cytoplasmic	379	386	0.80
Transmembrane Helix	387	407	0.94
Non-Cytoplasmic	408	429	0.89
Transmembrane Helix	430	449	0.91
Cytoplasmic	450	475	0.84
Transmembrane Helix	476	502	0.87
Non-Cytoplasmic	503	515	0.66
Transmembrane Helix	516	535	0.86
Cytoplasmic	536	543	0.61
Transmembrane Helix	544	563	0.89
Non-Cytoplasmic	564	572	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRDGDAFGP SVERDPGRGR RGLFRLCGGI ARPRRRHTAQ AGAGGGRHHH CGLVADGGDH  60
   61 PAAGRHRGQR AVLAGRRRGR RKRRCACGHA ALPCRGRRHQ PLVGAQPEHA RARGRCGGRA 120
  121 RGSGGAQPVD RGRGGGPALW RHNGDLRADR LRRAGRAPCR PASGRRRSPL AAAVRGPVRG 180
  181 ASADPGRCAG PHRGAARRAG RRHRDRLCRG AGLHLDCPAP EDPRAVSVPS ADLVRRIADH 240
  241 RRRQSRRGLW LGLGLLALLI GGVALTLSVG QSRVPPADVL RVLMGQDVPG ASFTVGRLRL 300
  301 PRAVLSVLAG LAFGLGGAAC QTLLRSPLAS PDIIGITAGS GAAAVLAIVV LGWSGPAVSA 360
  361 SAIACGLGTA LLIYLLAWRN GVAGARLILV GIGMSAMLQS VTAYLLLKAP QWSLQEALRW 420
  421 LTGSVNGARL SDALPLLLSL GVFGALLLGQ SRHLEAMRLG DDKAAALGVP LARSRLLIIL 480
  481 AVVGLIAVAT AVTGPIAFVA FLAGPIAARI SAPGRPILVP AALIGAALVL LGDYAGQVLL 540
  541 PGRYPVGVVT GAIGAPYLIY LIVRVNRTGG SI