YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69150293, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	273	0.64
Transmembrane Helix	274	298	0.78
Non-Cytoplasmic	299	304	0.58
Transmembrane Helix	305	329	0.85
Cytoplasmic	330	344	0.58
Transmembrane Helix	345	364	0.68
Non-Cytoplasmic	365	365	0.38
Transmembrane Helix	366	388	0.79
Cytoplasmic	389	396	0.63
Transmembrane Helix	397	412	0.93
Non-Cytoplasmic	413	417	0.71
Transmembrane Helix	418	438	0.88
Cytoplasmic	439	449	0.75
Transmembrane Helix	450	469	0.94
Non-Cytoplasmic	470	480	0.81
Transmembrane Helix	481	500	0.95
Cytoplasmic	501	513	0.83
Transmembrane Helix	514	531	0.93
Non-Cytoplasmic	532	537	0.72
Transmembrane Helix	538	557	0.91
Cytoplasmic	558	561	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHGQDQHQHG EGGGNRRDPE DRGDVARQQD HRSDRHQRPQ EAAHRVQRLA QSEACATDLR  60
   61 RGDGGDDGVA RRAADALADP VQCLGQHDLV DADRQRKDQP RQRTQPIAQN RQRFRPAAPV 120
  121 GEHAREEPGR GGDGDREPLD EADGEGRRAK PARQPERQQG VDHLGRHVHQ QADDAQHPDR 180
  181 WRDGRGGVLQ RLGHGVPLAG PGELMHGPRP WRNVRKVPRR RRRAGPAAGR SGWRARARAD 240
  241 SNPGKGLLTT HWTSPSMERV LAPPQETPAA RTRHAANLAG ALWMVAAMAG FTFEDALIKG 300
  301 ASSTVPIAQI LVTFGAGGAL VFAGLARWAG ESLFTPEVLS FPMRLRVVFE IAGRLFYVLA 360
  361 LALIPLSAAT VILQATPVVV VAAAALVFGE RVGWRRWSAI LLGMAGVLVI IRPGTDSFSM 420
  421 LSLLAVAGML GFAGRDLASR AAPATLGTNV LGFYGFLAVA LAGVMVSFWS DAPFVLPETR 480
  481 AGLFLGGAVL CGVCAYACLM KAMRTGEVSA VTPFRYVRLI FGVALGVLLF GERLTTPMLL 540
  541 GSAMIVLSGL FIMWRSASKG A