YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69150806, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	241	0.98
Transmembrane Helix	242	262	0.91
Non-Cytoplasmic	263	268	0.72
Transmembrane Helix	269	289	0.87
Cytoplasmic	290	305	0.85
Transmembrane Helix	306	327	0.91
Non-Cytoplasmic	328	335	0.68
Transmembrane Helix	336	357	0.88
Cytoplasmic	358	364	0.70
Transmembrane Helix	365	388	0.85
Non-Cytoplasmic	389	402	0.82
Transmembrane Helix	403	421	0.90
Cytoplasmic	422	437	0.88
Transmembrane Helix	438	460	0.88
Non-Cytoplasmic	461	465	0.75
Transmembrane Helix	466	490	0.87
Cytoplasmic	491	498	0.85
Transmembrane Helix	499	530	0.72
Non-Cytoplasmic	531	531	0.29
Transmembrane Helix	532	547	0.68
Cytoplasmic	548	556	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGDQRLPL GQGHQPAAGV REIRHRIGEL RPGQRGVGVE IVRLDPHGAI ARRMRHPGVQ  60
   61 RAQIGRALRR DQPARLQQHL AHQFQRLHAA GGDQHVLARQ PQRAGREARG DQVAQRRQAG 120
  121 DRAIAQRLVR VVADRLGGQP GQFLDRPDRG FGQAPGKVDQ IGYLSRRQKD RGHVVAAGQP 180
  181 GGKSGAHGRN GCIGHDPAVT VFRQQGKPDG AVAPPACARR RCISDRGEGT TGKTMQALKR 240
  241 IGIDTYMLLL IGMVLLGLLL PARGMAAEIL RGATFWAVTL LFFLYGAKLD PASVRAGLLN 300
  301 LRLQGLTFGA TYALFPVLGI GLAALFGGVL GPELTLGLLF LAVLPSTVQS SIAFTSIAGG 360
  361 NVPAAICAAS LSNLVGVVLT PLLVTHLLHQ EGGGASLDAI EKIAVQILLP FVAGQLLRRW 420
  421 IGGFVQRHRL LTMVVDRGSI LLIVYSAFGA GTVAGIWSAI PVPGLVLCFL VTALLLALVM 480
  481 GGMVGAGRLF HLPPQDQAVL FFCGSTKSLA SGLPIATAIF PAAAVGAIVL PVMIYHMTQL 540
  541 LVCSAIAQRL ARKAQA