YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69150802, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	280	0.84
Transmembrane Helix	281	305	0.85
Non-Cytoplasmic	306	332	0.76
Transmembrane Helix	333	354	0.93
Cytoplasmic	355	361	0.71
Transmembrane Helix	362	382	0.87
Non-Cytoplasmic	383	387	0.67
Transmembrane Helix	388	409	0.91
Cytoplasmic	410	415	0.72
Transmembrane Helix	416	437	0.93
Non-Cytoplasmic	438	461	0.78
Transmembrane Helix	462	482	0.93
Cytoplasmic	483	507	0.76
Transmembrane Helix	508	534	0.84
Non-Cytoplasmic	535	547	0.67
Transmembrane Helix	548	569	0.88
Cytoplasmic	570	577	0.65
Transmembrane Helix	578	597	0.92
Non-Cytoplasmic	598	604	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCRLPSGRP DPARRGRAAA PGAVREPVHR PAGDAAGCAG ADRLGLVSGA GSHRLGHGGS  60
   61 GRAPARQSRP GGGDLPDAAR PGAGRRLEFA RDDPAAATPG HPGRGVPGRN RHRRHPRQYP 120
  121 PHGQCPGPAG PGKGAAGAFR RRSGPAGRRA PGAAAAGRAL HGERLQFRPR QPGRADRRAG 180
  181 GLRQCRRRSR PAGGRGGAAG GAAALGSRPA GRGPPLSRQF ARAGGAGPPR AQGAEPGPAR 240
  241 RGHVRSRLGL RHPPHPARHS PVARRAPCLA GPAMTAPRYP LLIAALSLLV AALFLASLLT 300
  301 GPAGIGPGES LAALFRGDDL LALVMRELRL PRAILGFLVG AALGMAGAVL QGFLRNPLAE 360
  361 PGLIGTSASA ALGAVLAIQT GLSATFPLAL PLAALAGAAL SVLLVLMLAG PRGGALALIL 420
  421 AGIAISALAG AATSLVLNLS PNPFAINEIV FWMMGSLADR SMLHVWIAAP FMLLGFALLW 480
  481 PTRRALEALT LGEDAAASSG VHLGRLRLML VAGIAALIGG ATAVAGTVGF VGLVVPHVLR 540
  541 RAVGASPARL VPAAALGGAA VVLAADIAVR RIAPGHDLKL GVLTALVGAP FFLHLILRTR 600
  601 REGL