YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69151946, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLPVQKQIL YWGGALAVLL LALWGLGNAV TPFIMGAAVA YLFDPLADRL ERLSLSRTAA  60
   61 VVILTLCGLL LVVALFLLLV PVLVRQTTAL IETAPEMLQQ LQQFLMTRFP EIFTEGNPVN 120
  121 TALTNMGQQI SERGGQLVST VLGSVMGVVS MVMLIVIVPV VAFYLLLDWD NMVDRLDDLL 180
  181 PREHAGTIRR LGHEIDAALS GFVRGQGMVI LILGTFYSVC LGLIGLPFGV AIGVIAASLS 240
  241 FIPYVGVVIG GVTAIGVALF SFWGEPVWIG AVIAVFVIGQ VAEGNYLQPK IVGGHVGLHP 300
  301 VWLMLALTVF GTLFGFVGLL IAVPAAAALG VLVRFAVARY KESALYTGRE VPSPPAPPTM 360
  361 VELVPRGSTE RARQLAQMSR DVAVAQIQRD EHLAHLLEEH QHRQEAGRIP DAEGPPSPSA 420
  421 LWAEARENLP GKDG

Type	Start	End	Confidence
Cytoplasmic	1	8	0.79
Transmembrane Helix	9	41	0.74
Non-Cytoplasmic	42	58	0.69
Transmembrane Helix	59	82	0.90
Cytoplasmic	83	139	0.72
Transmembrane Helix	140	166	0.85
Non-Cytoplasmic	167	208	0.72
Transmembrane Helix	209	232	0.88
Cytoplasmic	233	240	0.52
Transmembrane Helix	241	262	0.88
Non-Cytoplasmic	263	300	0.44
Transmembrane Helix	301	333	0.81
Cytoplasmic	334	434	0.87