YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94984203, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADWVQNLMD SLGYLGILLL MIVENLFPPI PSELIMPSAG FAASRGDLNL LLVIAVGTLG  60
   61 SVLGTLPLYY LGRAFGEERL VQWADRYGHW LTLRGEDIRR ADDWFDRYGA GAVLFGRLVP 120
  121 GIRSLLSLPA GMSEMPLPTF LLYSTIGSGL WASALAGAGY LLGENYDQVE QYLGPASKVI 180
  181 LAVVVLAVVV WFVRRKKTLG VRKES

Type	Start	End	Confidence
Cytoplasmic	1	10	0.64
Transmembrane Helix	11	30	0.89
Non-Cytoplasmic	31	47	0.63
Transmembrane Helix	48	71	0.90
Cytoplasmic	72	139	0.71
Transmembrane Helix	140	162	0.90
Non-Cytoplasmic	163	173	0.87
Transmembrane Helix	174	193	0.96
Cytoplasmic	194	205	0.95