YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66781862, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	41	0.91
Non-Cytoplasmic	42	55	0.78
Transmembrane Helix	56	76	0.92
Cytoplasmic	77	86	0.81
Transmembrane Helix	87	106	0.94
Non-Cytoplasmic	107	121	0.88
Transmembrane Helix	122	144	0.92
Cytoplasmic	145	154	0.86
Transmembrane Helix	155	177	0.92
Non-Cytoplasmic	178	184	0.81
Transmembrane Helix	185	203	0.96
Cytoplasmic	204	217	0.81
Transmembrane Helix	218	238	0.94
Non-Cytoplasmic	239	246	0.81
Transmembrane Helix	247	266	0.95
Cytoplasmic	267	286	0.88
Transmembrane Helix	287	308	0.93
Non-Cytoplasmic	309	322	0.87
Transmembrane Helix	323	344	0.90
Cytoplasmic	345	351	0.86
Transmembrane Helix	352	372	0.92
Non-Cytoplasmic	373	379	0.77
Transmembrane Helix	380	401	0.62
Cytoplasmic	402	641	0.59
Transmembrane Helix	642	665	0.84
Non-Cytoplasmic	666	684	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASPSATLP APTFNDQEKR TTLIGLLVVF LLAALSQTIV STAMPRIIAD LQGFNLYSWV  60
   61 TTAYLLASTV MVPIYGKLSD LYGRKPILVF GIVVFLIGSA LSGLSGEPFL GNLLGGGMNQ 120
  121 LIAFRAVAGF GGAALFTTAF TILADMFAPA ERAKFGGLFG AIFGLASVVG PAVGGFLTDN 180
  181 LSWRWVFYVN LPLGLLALFL ILAKMPRLTH RAEGRIDLLG AALILSTTIP LLLALTWGGT 240
  241 TYPWDSARII TLFAVSAVSL IVFLLVEART KDAIIPLSLF RIRMFSLGNL AAFIMGMAFL 300
  301 GVILFLPLYM QMVLGVSPTK SGFSMLPLMG GLILSSIGVG QIVARTGKYK PWMIGGGVIL 360
  361 MLGIFFLTKI TTHTTLADLA WRMFVVGLGL GPSQSLFTLA IQNAVPLNQL GIATSSSQFF 420
  421 RQIGSTIGAA VFGTLLLNNL HTELPKHLPQ LPGMQMNANN FDLGALRASA NGSGNGPEQK 480
  481 IQEALNAQYA QIEQALNGDA AAAQAIAANP ALPAELKALV ANGGIQAQVH QKLTAQATQI 540
  541 ANVLKNGEAG RQALLKSPQT PAALKTQLQA LPAQALATPQ AAAATAQRVK QGILAQEPAA 600
  601 VQQAKQTVLA QLKTRLNEQA KTLAAQLTNG MKEGFTAAMT RMFGTSIWII LVGFLVTLFV 660
  661 PAIPLRNQME KAAPSTPATP NPAD