YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119377957, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.92
Transmembrane Helix	18	41	0.88
Non-Cytoplasmic	42	77	0.89
Transmembrane Helix	78	98	0.94
Cytoplasmic	99	109	0.75
Transmembrane Helix	110	133	0.87
Non-Cytoplasmic	134	155	0.88
Transmembrane Helix	156	178	0.79
Cytoplasmic	179	204	0.88
Transmembrane Helix	205	226	0.92
Non-Cytoplasmic	227	258	0.97
Transmembrane Helix	259	281	0.90
Cytoplasmic	282	306	0.98
Transmembrane Helix	307	332	0.91
Non-Cytoplasmic	333	363	0.92
Transmembrane Helix	364	387	0.91
Cytoplasmic	388	395	0.95
Transmembrane Helix	396	417	0.92
Non-Cytoplasmic	418	426	0.72
Transmembrane Helix	427	446	0.91
Cytoplasmic	447	483	0.94
Transmembrane Helix	484	506	0.90
Non-Cytoplasmic	507	537	0.90
Transmembrane Helix	538	558	0.94
Cytoplasmic	559	576	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDTSQTASR GFTLFPRLSG AAVAGILIAI FLMAFLILPV AQVIYVAFLD ARTGAFTLQN  60
   61 FQDFFSTTLF RESFVNSFYV SAMSVVVATL IALPLAYITT RFNFAGTAAI QALGIIPLIM 120
  121 PPFVGAVAMS LLFGRNGSIN LLLNQYFGFR IPFMEGLNGV ILVQSIHYFP FILINLSASL 180
  181 RNIDRSMEEA AQNLGSHGVR MFRRIVFPLA MPGYLAGAAL VFIKVFDDLG TPLLLNVNNM 240
  241 LAPQAYLRIT GVGINDPMGY VISFILVAFS VFSLWASFLF MRGKDYATVQ KGGGGLSRRD 300
  301 LKPSEKWLAW GVIVLILAMV LSPHIGLLLL AFGTIWSFSP LPDGFTVQHF GTIFTQSSQY 360
  361 VWNTIVYAGS AALIDVVLGT AIAYIVIRTK VAGRKWLDYM ATAALAVPGV VLGIGYLRMF 420
  421 HGIQLPFGLG QMSSFWGIII VALAVRRLPY ALRACMAALQ QVSLSLEEAA ESLGASRAST 480
  481 IRRIVVPLMT GGILAGFVTS FATAAVELSA TIMLVGRSSD APLAYGIYLY MQSPAGRGPG 540
  541 AALGILAVVI VALGTYLSQR IIERERARQT MTGQQH