YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150017754, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSITLLQGI LLAIMAMIVG FDFWLEGLYI FRPIIVCTLT GAILGDITTG LIAGGLTELA  60
   61 FAGLTPVGGT QPPNPILAGI MTTVIAYTTG ADVKATIGLA LPFSFLMQYV ILFYYSAFSV 120
  121 FMNKADKYAE EGDTAAFTRL NITTTLIVGI TYGVIVFLCT YVAQEPMRTL VESMPEWLKH 180
  181 GFEIAGGILP AVGFGLLLRV MLKIEYVPFL IIGFLVASFV QFTNLLPVAL IGAAFALYGY 240
  241 VNDKNKAQVV NVVNSNQGGE DYEDGI

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.64
Transmembrane Helix	6	25	0.93
Cytoplasmic	26	33	0.57
Transmembrane Helix	34	57	0.82
Non-Cytoplasmic	58	72	0.57
Transmembrane Helix	73	91	0.62
Cytoplasmic	92	96	0.37
Transmembrane Helix	97	118	0.84
Non-Cytoplasmic	119	139	0.43
Transmembrane Helix	140	163	0.87
Cytoplasmic	164	179	0.44
Transmembrane Helix	180	202	0.87
Non-Cytoplasmic	203	208	0.40
Transmembrane Helix	209	239	0.75
Cytoplasmic	240	266	0.46