YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69933848, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADASPRVFN VLFLCTGNSA RSIIAESVLR KEGDARFRAF SAGNQPKGEV HPRTLKILQN  60
   61 YHYPTEGLRS KSWDEFAGPD APVMDFVFTV CDDAAGEACP YWPGQPMTAH WGLPDPAAAT 120
  121 GSELQRDMAF IETLRYMKAR IQTFAALPIG TLDRASLVSR LHEIGRSEGA NGAADGMDVV 180
  181 IYHNPDCGTS RNVLAMIRNA GIEPHVVEYL KTPPSRAMLE QLIARMGIAP RDLLRQKGTP 240
  241 YAELGLDDPA LPAAALVEAM LAHPVLINRP IVVSPRGVRL CRPSEQVLDL LPPQRAAFSK 300
  301 EDGEQVVDAQ GNRIRPA

Type	Start	End	Confidence
Signal Peptide	1	22	0.58
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	317	0.99