YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94555255, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERTTSIALG SVVVAAVVLA LKFLAYLLTG SVALYSDALE SIINVAAALT ALIALRVASR  60
   61 PADANHPYGH SKAEYFSAVA EGVLIVLAAL SIAREAIPAL QQPRPVAAAP AGLLVNLGAS 120
  121 VLNALWAGVL LRTGRAARSP ALLADGRHVL SDVVTSVGVL VGVLLARLTG LHWLDPLLAL 180
  181 LVALNILWSG WNLMRESVGG LMDAGVDPAT EARLRQAMSQ HAEGALEMHD LRTRHAGRMT 240
  241 FVEFHLVVPG TMSVQEAHAI CDRLEDAIRA EIEGAAVTIH VEPQDKAKHH GVLVI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.94
Transmembrane Helix	7	28	0.91
Non-Cytoplasmic	29	37	0.74
Transmembrane Helix	38	58	0.90
Cytoplasmic	59	74	0.91
Transmembrane Helix	75	97	0.87
Non-Cytoplasmic	98	106	0.90
Transmembrane Helix	107	130	0.89
Cytoplasmic	131	147	0.91
Transmembrane Helix	148	168	0.91
Non-Cytoplasmic	169	172	0.72
Transmembrane Helix	173	194	0.84
Cytoplasmic	195	295	0.97