YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149906025, gi...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKRKFIKLT ILVSLIFITN ILIFKFCNID DKNITLSYKI VSNEEDSYQV FYGTDMLWSE  60
   61 EQSQINSYTN INRQETLKFS IPKDITNLRF DFGEHPANIN VSEIKLSCWG KSINIDLNEI 120
  121 LNENNENQIG EVQEINNSLN IQTIGNDPYV VYKMDSTLIS GLIEYEDSIN NAIKLGSCIL 180
  181 IDILAAIVLR KSRSVLILIQ ELKNNKTLIW SLSKNDFKTK YAGSYLGIIW AFIQPIVTIL 240
  241 VYWFVFEYGL KSGSPIKGVP FIVWFMSGLV PWFFFQEALL NATNCMLEYT YLVKKVVFKI 300
  301 SILPIVKILS ALFVHLVFIV FLFFVAAIYR FYPSLYTTQL IYYSFCTFCI VLGISYTTSA 360
  361 IVIFFKDLGQ IINIFLQVGM WLTPIMWSYT MVPQQYQWIL KLSPMYYIVE GYRDTFINHV 420
  421 WFYERYFQTI YFWVVTLGVF AIGAVVFKKL KPHFADVL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.33
Transmembrane Helix	6	27	0.58
Cytoplasmic	28	222	0.61
Transmembrane Helix	223	246	0.89
Non-Cytoplasmic	247	260	0.75
Transmembrane Helix	261	280	0.75
Cytoplasmic	281	307	0.75
Transmembrane Helix	308	329	0.90
Non-Cytoplasmic	330	339	0.80
Transmembrane Helix	340	364	0.89
Cytoplasmic	365	370	0.81
Transmembrane Helix	371	391	0.89
Non-Cytoplasmic	392	428	0.92
Transmembrane Helix	429	447	0.97
Cytoplasmic	448	458	0.88