YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69140838, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYDRQLDRR RNADSRFLGF TSGPDQPMPI TILDLVLLAV MLISGLLAMI RGFMREVLSI  60
   61 ASWGIAALAT LYSFQKLLPF AKTYINSETL AAAAVIGGVF IGTLIVISIL TTRISDMVLD 120
  121 SRIGALDRTL GFLFGLARGL LIVVVAFLFF TWLVPDKQRP DWVTGAKSLT VLNSTGAWLQ 180
  181 SLLPDDPENT ILNKLKKNKP DEEQSDTEPA SPGSDGYSKP ARDSLKKLID GKPEGAAK

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.83
Transmembrane Helix	30	50	0.93
Cytoplasmic	51	56	0.75
Transmembrane Helix	57	78	0.84
Non-Cytoplasmic	79	89	0.78
Transmembrane Helix	90	111	0.95
Cytoplasmic	112	129	0.81
Transmembrane Helix	130	153	0.91
Non-Cytoplasmic	154	238	0.84