YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69142386, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLLPFPIV SASLLAFWLL LNQTLSPGHI LLGSAVALIG GWGLAALRPP KAHPRRPGAI  60
   61 VRLAAVVFAD IVRSNIAVAR IILGPKRSER TPGFVEIPLE LRDPYGLAAL ACIITSTPGT 120
  121 LWVDFNEASG ILTIHVLDLV DKAEWVRTIK TRYERRLMEI FT

Type	Start	End	Confidence
Cytoplasmic	1	4	0.55
Transmembrane Helix	5	21	0.59
Non-Cytoplasmic	22	27	0.52
Transmembrane Helix	28	47	0.70
Cytoplasmic	48	62	0.58
Transmembrane Helix	63	79	0.39
Non-Cytoplasmic	80	162	0.51