YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91799837, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPAAHPRRV LFVLVLIAAG SLADPAFAQD ISINLGGAGN GGVTERAIQL IALLTVLSIA  60
   61 PSILIMMTSF TRIVVVLSLL RTALGTATAP PNSVIIALAM FLTAFVMGPT LQKSYDDGIK 120
  121 PLVANQITVE EALQRASVPL RGFMQKNVRE QDLKLFIDLS GEPPPATPAD LSLRILMPAF 180
  181 MISELKRAFE IGFLLFLPFL IIDLVVASVL MSMGMMMLPP VVVSLPFKLI FFVLVDGWSL 240
  241 VAGSLVQSYG S

Type	Start	End	Confidence
Signal Peptide	1	28	0.82
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	46	0.97
Transmembrane Helix	47	70	0.84
Cytoplasmic	71	83	0.67
Transmembrane Helix	84	106	0.76
Non-Cytoplasmic	107	190	0.77
Transmembrane Helix	191	214	0.84
Cytoplasmic	215	224	0.43
Transmembrane Helix	225	246	0.83
Non-Cytoplasmic	247	251	0.50