YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65319950
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDENCIHDLR QIPVIIGTLY GGFPVGITLF AILLITRFSF YGFSMLTIVV YGTMFIITAF  60
   61 ASAKFNTYNR KIKVTYAMFL TFFLAIFTTV IVLTLSDFEV NNLYIIYFII LPTILMLFVV 120
  121 YFNEVLKDAL CMRSKLIKME KMEIVSQLAA SISHEVRNPL TVVKGFTQLL KTPNLTPESR 180
  181 DEYIKHILEE LHRAQGIIXD YLTFAKPASE KLDEISVEQE LNRVINMILP LCNMNTIHIT 240
  241 KDFSMATIVG NKQHFQQCFL NLIKNGIEAM PNGGTLNISS SISNNKVIIR IEDSGIGMSQ 300
  301 EQVNRFGEPY FNTKTKGTGL GTMVAVKIIE TMQGSLRIRS VVNKGTTLTI TFPKCSQNSS 360
  361 DNK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.92
Transmembrane Helix	14	35	0.92
Non-Cytoplasmic	36	42	0.70
Transmembrane Helix	43	63	0.91
Cytoplasmic	64	73	0.83
Transmembrane Helix	74	95	0.93
Non-Cytoplasmic	96	102	0.88
Transmembrane Helix	103	125	0.91
Cytoplasmic	126	363	0.98