YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65319651
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCATLFLIKY SKNKKGGATM IENYFLFIIM SICLIILPGP DTAMATKNTL VAGKVGGVKT  60
   61 VFGTCIALLI HTLAAVIGLS ALIVKSALLF SIFKYVGALY LIYIGIKALL AVRNKEGVDT 120
  121 NDISLHNEDE HTSCFRQGFL TNLLNPKVAV FFLTFLPQFL NPNHNTFIQL LVMGLTYLIL 180
  181 TVIWXAFYIF LIDKISAFMK KPKTQRYIQG LTGIVLIGFG IKLAFEKSN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	40	0.92
Non-Cytoplasmic	41	59	0.77
Transmembrane Helix	60	84	0.84
Cytoplasmic	85	90	0.66
Transmembrane Helix	91	111	0.68
Non-Cytoplasmic	112	166	0.66
Transmembrane Helix	167	191	0.88
Cytoplasmic	192	206	0.88
Transmembrane Helix	207	225	0.91
Non-Cytoplasmic	226	229	0.85