YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDPC_NITHX
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKELRPAIV ILVALTIITG LIYPLAMTGA AQVLFPYQAQ GSLIEQGGKT IGSALIGQSF  60
   61 TADRYFHGRP SATTAPDPKD ASKTVPAPYN AVNSMGSNLG PTSKALADRL RQDVATLKAQ 120
  121 NPSAAVPVDL VTASGSGLDP DISPQAARFQ VPRVAKARNL PEAEVETLID SRTEGRDLGF 180
  181 LGEPRVNVLK LNLALDRMAA SGQPR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.58
Transmembrane Helix	9	31	0.59
Non-Cytoplasmic	32	205	0.94