YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150019051, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.89
Transmembrane Helix	17	39	0.88
Non-Cytoplasmic	40	115	0.94
Transmembrane Helix	116	137	0.90
Cytoplasmic	138	146	0.83
Transmembrane Helix	147	166	0.92
Non-Cytoplasmic	167	172	0.67
Transmembrane Helix	173	190	0.85
Cytoplasmic	191	194	0.71
Transmembrane Helix	195	212	0.62
Non-Cytoplasmic	213	216	0.55
Transmembrane Helix	217	233	0.71
Cytoplasmic	234	239	0.88
Transmembrane Helix	240	262	0.87
Non-Cytoplasmic	263	391	0.98
Transmembrane Helix	392	413	0.91
Cytoplasmic	414	431	0.94
Transmembrane Helix	432	452	0.94
Non-Cytoplasmic	453	458	0.85
Transmembrane Helix	459	477	0.92
Cytoplasmic	478	492	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNILNRINS IFKNINYPLA AFFLVIIIGI FTLFIKPIIG MADNGDFYRV ISSNGVYELN  60
   61 PNDSDLYNGY FYRHYGIYKY NNDIEKNFIS TQGIFIKIAV YISQMINKNF ILDIRFMSWM 120
  121 FLFVEAIGIY LIVKVLINQV TEEKHKLIIT LVTIFIFCDT TYLAYYNSFY GEAINISFFL 180
  181 LSIGILLNMA EFNKFSKLNI LLFGISSFIF LGSKQQLSPV GILIAVLCLR IGFKNKEKLF 240
  241 KGLSMVLAIG FVISSILFYK QITGDFQYIN GYHAMNRGIL LYEEDPDEVM KFFNLNEQYS 300
  301 LLKDTTFYDD VTLVNLYDKQ LIEDYYKKFT TTKIISYYIT NPRAFFKMLK IAFDNGYSIR 360
  361 PNAMGNYEKS ENKEFGAKSY FFALYSTVKE KVFTGNIVLS IIVIIGYCYS SAVRYIKARK 420
  421 INCDTMIFKE EAYFYIFLVG ISQIIISVIG AGDADLAKHV FMYNMSFDLI LIYFISIKLQ 480
  481 KHQVKIKSKN NK