YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120597863, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.68
Transmembrane Helix	18	39	0.91
Non-Cytoplasmic	40	48	0.64
Transmembrane Helix	49	67	0.92
Cytoplasmic	68	74	0.63
Transmembrane Helix	75	93	0.96
Non-Cytoplasmic	94	112	0.63
Transmembrane Helix	113	129	0.69
Cytoplasmic	130	138	0.72
Transmembrane Helix	139	157	0.81
Non-Cytoplasmic	158	178	0.55
Transmembrane Helix	179	202	0.89
Cytoplasmic	203	222	0.72
Transmembrane Helix	223	242	0.70
Non-Cytoplasmic	243	271	0.83
Transmembrane Helix	272	294	0.82
Cytoplasmic	295	304	0.83
Transmembrane Helix	305	329	0.81
Non-Cytoplasmic	330	337	0.76
Transmembrane Helix	338	360	0.89
Cytoplasmic	361	368	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAHTQHQNI WQRLHIDLPL LLGLFAVMGF GLFVIYSASG EDLGMMERQL FRMVLSLVIM  60
   61 FIMAQINPEA LKRWALPIYL AGIVLLLGVH FFGEINKGAQ RWLNLGFMEF QPSELIKLAF 120
  121 PITMAWYISK FQLPPKKRYL AGAGVILLVP TLLIAKQPDL GTSILVAASG IFVLFLSGMS 180
  181 WAIVGTFVAA ILAFLPILWY FLMHDYQRTR VLTLLDPEQD PLGAGYHIIQ SKIAIGSGGL 240
  241 WGKGWLDGTQ SQLEFIPERH TDFIFAVIGE EFGLVGSIIL LIMYLYIIGR GLVIASRAQT 300
  301 SFARLLAGSI TLTFFVYVFV NIGMVSGILP VVGVPLPLIS YGGTSMLTLM TGFGILMSIH 360
  361 THRRFVDR