YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|104773700, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRDTSLFT DWVLNNRFSV GLINVLLVLV IVLVFNKISF ILNPVNTFIS AILPPLLVAM  60
   61 VQYYLMEPVV DKLEEKFKVP RTVTIMVIFA IVTVFLIWAI NSLIPVVQSQ IDSLVKNWPT 120
  121 IWKNSTNAVD ELLHSPKFSG LRDSLQKQMT SLQKNFSKSM GSTVSSALGN LTSAVTVATA 180
  181 VFTTLATAPF LLFFMLKDGH KLRPFLVKFA PQRWEQATSK LLHEVNQAVS SYVIGQVSVA 240
  241 ICVGIMFFIG YTIIGEPYGA ALAICAGFLN LIPYFGAFIG LIPALIIALV TDLPMVAKVL 300
  301 VVFFIEQIIE TRVISPLVVG NRLKMHPATT IIVMLGAGSV WGLWGVIGGI PIYAVMKILL 360
  361 THVYRYYRKV SHLYDDSF

Type	Start	End	Confidence
Cytoplasmic	1	17	0.89
Transmembrane Helix	18	39	0.87
Non-Cytoplasmic	40	46	0.70
Transmembrane Helix	47	66	0.94
Cytoplasmic	67	81	0.89
Transmembrane Helix	82	100	0.94
Non-Cytoplasmic	101	173	0.93
Transmembrane Helix	174	196	0.91
Cytoplasmic	197	231	0.94
Transmembrane Helix	232	254	0.89
Non-Cytoplasmic	255	259	0.80
Transmembrane Helix	260	291	0.71
Cytoplasmic	292	329	0.48
Transmembrane Helix	330	355	0.80
Non-Cytoplasmic	356	378	0.45