YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69133946, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISSGLPASR ATAARVLIIT LSFFSDVSDR YACCRVWRRR RRQTIWAYVV TGVTLARGAI  60
   61 GRFGHVFRGT AARWGYATIE RKAPRHLVSV LPSIPAAPWR RESQNRHSHS MLRHAGVSAR 120
  121 LCSGRLEIAC SRLHLGEDDV VSLAQAMSGR RGQMNIGDVA AKSGLPAKTI RYYEDIGLIC 180
  181 PNRSANGYRC FEERDLHKLA FLGRARALGF SIEDCRVLLG LYEDDSRASA DVKQLAQAHL 240
  241 CKIEAKISDL AAMRETLSEL ITCCSGDNRP DCPILKDLSG ETDPIG

Type	Start	End	Confidence
Cytoplasmic	1	43	0.57
Transmembrane Helix	44	61	0.67
Non-Cytoplasmic	62	286	0.90