YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82742544, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKPLTLAVA FILAPLSAFA ANFTEGTHYT QISDKAPSAE PKLTEFFSFY CHNCFNMETN  60
   61 YLPDIKANLD KKVAFDSKHV DFMNSDIGTE VMRSLAVIQN VDNVDNKDAL THAMFAAIQG 120
  121 EEGANGHDHS APGHKHEPQI NNRDDIKQIF AKFGIDAAKY DELADSKNTN EKLALWRAQQ 180
  181 NQFKVESVPA FIVNDKYAVN LSSIKTLDEL ISLINYLAIE KDAQAPKSSG GSLTWLFLAF 240
  241 AAVIGLSRQK RIR

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	230	0.99
Transmembrane Helix	231	247	0.73
Cytoplasmic	248	253	0.59