YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124507966, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	184	0.99
Transmembrane Helix	185	206	0.89
Cytoplasmic	207	214	0.69
Transmembrane Helix	215	235	0.92
Non-Cytoplasmic	236	243	0.75
Transmembrane Helix	244	262	0.94
Cytoplasmic	263	276	0.84
Transmembrane Helix	277	297	0.93
Non-Cytoplasmic	298	303	0.70
Transmembrane Helix	304	325	0.90
Cytoplasmic	326	333	0.86
Transmembrane Helix	334	356	0.92
Non-Cytoplasmic	357	363	0.92
Transmembrane Helix	364	385	0.91
Cytoplasmic	386	624	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVSRFLLF FLGLLTSVTS AAALLHIDTD TPTPLNLTPW LQVSHPSTTQ LADIQNLSKQ  60
   61 EWRNFTNKDI QKLSQHNFWL NISLNSTDAS LSRILALDNP LLDKVTIYHL INQKPFNVVY 120
  121 MGDSLPYSER PLLSNIFLYP FKISANEEHT FYLHIETEGS AAVPLYLWSA NDLAQIAEST 180
  181 AVEHGFQLGV LAAIGIFSLF IAVASGSFSY SYYSGYVLSM TLLVATINGF AFRFIWPEWP 240
  241 MLQQIMVPIL LPVVMAFALM FTEKILQLKY YNRHMLLICR YSAVYILLVG LLLPFIHYGT 300
  301 ALYIEIISVA ILSLILMVLA IMQAINGHKL ARLYTIGWVS MLTGACISSL LYLSVIDLNM 360
  361 KPQTPVMLGL TFEIIFMSLV LAIRYNDERK AKLRIQQEAL KQAQKIRSAR EEALKLEAET 420
  421 NEKLEQMVQE RTLELEITLR ELHEVNQKLT EQSTIDSLTG VKNRSAFDKR LLAESRISRR 480
  481 QETPIAVLML DIDKFKSIND QFGHLAGDQA LKIIAQTLQQ NLKRPTDLVS RFGGEEFAII 540
  541 LPNTTADGAL QVAETIRDAV TSIGLMWEGK PIPLTVSIGV SADIVASDQH STTLLEQADK 600
  601 ALYQAKNSGR NQVKLYSSAT AEPN