YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120598284, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDDEIDLRE LFSVIWQGKW RIIGITAVFA IASVGLALYL PNIYKSEALL APASEEQGGG  60
   61 LSALASQFGG LASLAGVNLG GKGGTDKTQL AIEVLKSRQF TSEFIQKHNI LADLMAAKKW 120
  121 DRDADKIIYD PELYNEQTNT WVRDVEPPVK PEPSMQEAYK EFSKIIAVNK DKETAMVTVS 180
  181 IEHLSPTVAQ QWVTWLIQDI NKVMKERDVA EAHRSTDFLN KQIALTNVAD IKAVLYKLIE 240
  241 EQAKTIMFAE VRDEYVFKTI DPALAPEEKA KPKRALICVL GTMLGGMLGV MLVLVRHFMR 300
  301 KEQKLARA

Type	Start	End	Confidence
Cytoplasmic	1	19	0.87
Transmembrane Helix	20	40	0.94
Non-Cytoplasmic	41	60	0.80
Transmembrane Helix	61	81	0.63
Cytoplasmic	82	274	0.75
Transmembrane Helix	275	298	0.88
Non-Cytoplasmic	299	308	0.73