YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120557618, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	190	0.99
Transmembrane Helix	191	215	0.91
Cytoplasmic	216	236	0.80
Transmembrane Helix	237	259	0.87
Non-Cytoplasmic	260	270	0.76
Transmembrane Helix	271	291	0.96
Cytoplasmic	292	311	0.93
Transmembrane Helix	312	335	0.89
Non-Cytoplasmic	336	353	0.80
Transmembrane Helix	354	375	0.91
Cytoplasmic	376	386	0.81
Transmembrane Helix	387	409	0.85
Non-Cytoplasmic	410	415	0.56
Transmembrane Helix	416	431	0.82
Cytoplasmic	432	442	0.71
Transmembrane Helix	443	461	0.90
Non-Cytoplasmic	462	604	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLSLIFT SLLLLAPLTY SEGVLANTFG FLKSEPELMP VDKAFVFDYK QEGNQVKLNW  60
   61 VIADGYYMYR DKLVFSVNGA ELGTIALPQG KPHTDEYFGE QEVYYTYVDI PVGLKQADEN 120
  121 STLTVTFMGC AEGKLCYPPT KREVSLKAVA ANDGILANGD ATKTQAVSPD KTTQPITQQD 180
  181 TLSQMLSNDS LIWTLVIFFG LGIGLALTPC VFPMYPILSG IIVGQGQKLS TAKAFTLSMA 240
  241 YVQGMAITYS LLGLVVASAG MKYQAALQHP AVLVVLAILF FVLSLSMFGL YDLKLPSRWQ 300
  301 EKMNSVSNSQ KGGNLVGVFL MGVISGLVAS PCTTAPLSGA LVYVAQTGDL LQGFLALYVL 360
  361 SMGMGVPLLI IGTSGGKLLP RAGAWMNIIK TVFGFLLIAV SIVMLGRIWT GVISDVLWSL 420
  421 WGISFTGYLM HQNKLSTFNW KQTVRSVLLM LTLLASFSYG FQSVMRHFGF SHNPVGVAVT 480
  481 SEESHGFKRI KSVEDLDREI TAAVAEGKPV MLDLYADWCV ACKEFEAITF KDAEVLNRMN 540
  541 KIVLLQADVT KTDAVDVALL EKYNVLGLPT LLMFNEQGAQ REDLRVTGFM GPKDFAAHLD 600
  601 HLVK