YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120597773, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQRPTQPHP TASQSSAITT NPQQPIPQEA FDWYDEYAHG IIDRREFMAR LAGLVALGFT  60
   61 LTSLTSALLP NYALAEQVSF NDPSIKASYV KFPSPNGYGE GRGYLVVPSS LLKIEVDGKP 120
  121 AETLIYDTDK KAPVVLVVHE NRGLNPYIED VARRLAAQGY IAFAPDALYS LGGYPGNDDT 180
  181 GRAMQSNLDR AKMEQDFIAA ALFLKSHPQS SGKLGAVGFC FGGYIVNMLA ATIPDDLNAG 240
  241 VSFYGTPAAP ELRSRVKGPL MLQFAELDQR INDTWAEYEA QLKANKADYV AYLYPKVNHG 300
  301 FHNDSTARYD KTTAEFAWSR SLDFFSKYLG G

Type	Start	End	Confidence
Cytoplasmic	1	50	0.91
Transmembrane Helix	51	74	0.82
Non-Cytoplasmic	75	331	0.97