YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116103968, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQQNSDQQ TLKRKPKRRH PILRTLTVIL LVALFLAGGY AARFYSQAKK AVAKTYDPVS  60
   61 TKAVSSDLDG KKPISILLLG TDTGAFGRKD TGRSDTMMLV TINPKEKKTT MTSIPRDTLA 120
  121 EMVGTGNDSP TYEKINSAYA YGKSSAAIKT VEKLLNVPID YYVTVNMEGL QKIVDAVGGV 180
  181 DVNVPFTWTD ANTGGQTFKK GKAHLNGELA LAYARMRDED PEGDYGRQKR QQEVINQIVK 240
  241 HLMSVKSLTN YQKVMDSLSS SMRTNLTFDD MMAIAQNYRA SATTIDRQQL KGIGVYIDEA 300
  301 AYQVMTTETL QKMSNELRGQ LGLESKTLSN FNTQQNEINN ANGFDWTANN PVYTVSLDGA 360
  361 TTGP

Type	Start	End	Confidence
Signal Peptide	1	41	0.68
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	364	0.99