YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82721469, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKLWQRFL PRSAFSQTVM LIGCLLLINQ LVSYVTVAVY VLKPSYQQIN QLIARQVKLL  60
   61 FVDGIDIGRE HLTIVDALNA KVHDDGMKIY NQQQAREAGI EQATYYGFWS SQMSEYLGGE 120
  121 AEVRVTHGSV LQIWIRPPQA PSVWIKVPLI GQNVSDLSPL TLYLIVIGAL SVAGGWWFAR 180
  181 QQNRPLRRLQ KAAISVSRGE FPDPLPLKGS SEIVEVTNAF NQMAHSMKQL EQDRALLMAG 240
  241 ISHDLRTPLT RIRLASEMMV EEDQYLKDGI VNDIEDMDAI ISQFIAYIRQ DQEANRELAQ 300
  301 INKLIQDIVQ AEANRAGEIE MVLTDCPETL FQAIAIKRVL SNLVENAFRY GSGWIRISSQ 360
  361 YDGKRIGFSV EDNGPGIDES QIQKLFQPFT QGDIARGSVG SGLGLAIIKR IIDRHQGQIT 420
  421 LSNRKEGGLK AQVWLPLE

Type	Start	End	Confidence
Cytoplasmic	1	18	0.60
Transmembrane Helix	19	39	0.63
Non-Cytoplasmic	40	159	0.96
Transmembrane Helix	160	179	0.92
Cytoplasmic	180	438	0.91