YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120596971, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMPLRLTAS PKRLQQELLR QPLMLYRIVS ILLLGITPAI AAPASGEFIS NKRCELFQSK  60
   61 NKQTNPEQLQ SNIGERYTVQ EILGNTTNPQ WLRVKTNAAT SPLRWISGSC GQYLTSVTNN 120
  121 DLSTPVSAME PSQTTTASDI KAINRDSLKE HSTKDQRQVS HCQLEGNLDS HVLALSWQST 180
  181 FCELNGNRKA ECSDLNKTDE SPLWQQFSLH GLWPNRKQCG TRYGYCSTVK LQPSDFCSYP 240
  241 EIELNASVRK NLEEVMPSAR YGTCLERHQW WKHGTCRNQE PNDYFLLATQ LTQTINASAW 300
  301 VKNFIHGNIG KQVTRQELNT SFDKSFGQGA HTKMSLECAK GLLSEIRINL PEVIKGSDSI 360
  361 PALLAKANKA GKGSCPDTII INNSN

Type	Start	End	Confidence
Signal Peptide	1	41	0.78
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	385	0.99