YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82721725, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.83
Transmembrane Helix	53	78	0.83
Non-Cytoplasmic	79	85	0.72
Transmembrane Helix	86	110	0.81
Cytoplasmic	111	117	0.65
Transmembrane Helix	118	141	0.89
Non-Cytoplasmic	142	170	0.75
Transmembrane Helix	171	191	0.91
Cytoplasmic	192	200	0.71
Transmembrane Helix	201	221	0.78
Non-Cytoplasmic	222	231	0.81
Transmembrane Helix	232	252	0.94
Cytoplasmic	253	264	0.89
Transmembrane Helix	265	288	0.88
Non-Cytoplasmic	289	344	0.88
Transmembrane Helix	345	369	0.83
Cytoplasmic	370	389	0.89
Transmembrane Helix	390	410	0.95
Non-Cytoplasmic	411	444	0.81
Transmembrane Helix	445	466	0.89
Cytoplasmic	467	484	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLCCKLTM HCCYVVAVAS LNISHQGWCK VVQWHPSIMA IEHHPRSDRK LFGAPPFILS  60
   61 VSFALLIILG TCLLKLPIAT EAPITWLQSL FTATSAVTVT GLVVVDTGTV FTPFGQIVIA 120
  121 LLIQCGGLGL MTFAIVTLIA LGGKIGFLQQ TVAKEAFNQT DTSTLVSTAK AVLLFSLLVE 180
  181 AIGMLILSVH WSNELGWQTS LFHGFFYTIS AFNNAGFALS ADSLMPYVAD PVINLTITGL 240
  241 FIIGGLGFSV WIDLRRNKCW SKLTVYSRMM ITGTILINAV AVIAIYLIEY NNPNTLAPLS 300
  301 ELGKWLASWF QAVTPRTAGF NTLAIDQLED GSTLLMLVLM FIGGGSLSTA SGIKVVTFMV 360
  361 LILATYGYLR RDEAVYVFKR EIPKDTISKA LALTMISIGV TWLAIFALVL TEKAPLVDIV 420
  421 FEAVSALGTV GLSRGLTGSL SDMGLGIIIF MMYMGRLGPL MLAYFLANPR VKKLRYAETK 480
  481 LAIG