YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148549495, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNFPLLLV IAVFICGLLG LIDLLFLAPR RRAAIANYQG SVSQPEMAVV ERLNKEPLLV  60
   61 EYGKSFFPVL FIVLVLRSFL VEPFQIPSGS MKPTLEVGDF ILVNKFSYGI RLPVIDKKVI 120
  121 EIGDPQRGDV MVFRYPSDPN VNYIKRVVGL PGDVVRYTND KRLFVNGQPV AEQLVGSEPG 180
  181 TLGSAQLYKE KLGAAEHLIR KEMSRYRMPP DQQWTVPAGH YFMMGDNRDN SNDSRFWDDP 240
  241 NIPKELHGMV PDRNIVGKAF AVWMSWPEPK LSHLPNLSRV GLIH

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.73
Transmembrane Helix	7	27	0.83
Cytoplasmic	28	61	0.78
Transmembrane Helix	62	81	0.64
Non-Cytoplasmic	82	284	0.83