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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62464008
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFATVTAFLV APSVKAETTV KIASDSSYAP FEFQNGQKKW VGIDVDIMQE VAKINDWKLE  60
   61 MSYPGFDAAL QNLKAGQVDG VIAGMTITDE RKDTFDFSNP YYTSALTIAT TKDSKLTDYS 120
  121 ELKGKAVGAK NGTAAQTWLQ ENQKKYGYNI KTYSDGVHMF ATLSSGNIVG AMDEVPVISY 180
  181 AMKQGQDLAT NFPSISLSGG YGFAVMKGKN QTLVDGFNKA LTEMKSNGDY DKILKKYGIT 240
  241 TSKKATPKKD VYTIASDNSF APFEFQNDNK QFTGIDVDLL NAIAKNQGFK LKWNFIGFQA 300
  301 AVDSVQSGHA DGMMSGMSIT DARKQVFDYG NPYYSSNLTI ATSSTDDSIK SWKDLKGKTL 360
  361 GAKNGTASFD YLNDHAKEYG YTVKTFTDAT TMYSSLNNGS INALMDDEPV IKYAIKQGQK 420
  421 FTTPIKPIPD GQYGFAVKKG SNPELIEMFN NGLANLRANG EYDKIIDKYL ASDAKTIQSS 480
  481 AKENTFFGIL QNNWEQIGRG LLVTLELAVL SFILAMIVGI IFGLFSVAPS KILRTIARIY 540
  541 VDLNRSIPLL VLTIFIFYGI PNLLQIITGH QSPLNEFTAG VIALTLNSSA YIAEIVRSGV 600
  601 QAVPSGQMEA SRSLGVTYLT SMRKVILPQA IKITIPSLIN QFIITLKDTT LVSVIGLVEL 660
  661 LQTGQIIVAR NFQAFRVYGL IGLVYMIVLL FLMWVGRRVE KRMK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle