YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82738627, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVALLTVAG VALDALLGEP QRRHPLVAFG NMAGTLERRL NAGGRGWRSH GVSAWFLAVV  60
   61 PLTLVALLLS WLPYIGWLVD VLALYCAVGL RSLGEHVLPV ANALRQGDLA EARHRVGYLV 120
  121 SRETRELDEP AVARAATESV LENGSDAVFA ALFWFVVAGA PGVVLYRLSN TLDAMWGYRN 180
  181 ERFERFGWCA ARIDDVLNYI PARLVALTYA LLGKTRLALA CWRKQGPLWD SPNAGPVMAA 240
  241 GAGALGVELG GPAVYHGELH ERPRLGEGPV ADADAIERGW QLVQRGVWLW LLMICLGAYI 300
  301 NA

Type	Start	End	Confidence
Cytoplasmic	1	51	0.93
Transmembrane Helix	52	75	0.87
Non-Cytoplasmic	76	146	0.84
Transmembrane Helix	147	169	0.88
Cytoplasmic	170	285	0.70
Transmembrane Helix	286	300	0.81
Non-Cytoplasmic	301	302	0.55