YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82715032, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	24	0.94
Non-Cytoplasmic	25	39	0.87
Transmembrane Helix	40	61	0.88
Cytoplasmic	62	77	0.78
Transmembrane Helix	78	96	0.94
Non-Cytoplasmic	97	114	0.85
Transmembrane Helix	115	138	0.84
Cytoplasmic	139	149	0.84
Transmembrane Helix	150	170	0.80
Non-Cytoplasmic	171	238	0.84
Transmembrane Helix	239	261	0.78
Cytoplasmic	262	310	0.70
Transmembrane Helix	311	335	0.80
Non-Cytoplasmic	336	355	0.55
Transmembrane Helix	356	374	0.88
Cytoplasmic	375	380	0.40
Transmembrane Helix	381	396	0.26
Non-Cytoplasmic	397	403	0.58
Transmembrane Helix	404	424	0.86
Cytoplasmic	425	454	0.73
Transmembrane Helix	455	475	0.84
Non-Cytoplasmic	476	485	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSSNVFLF LFLPIFLGLY YLSGQRYRNL LLLVASYIFY AWWRVDFLAL FAGVTLWNYW  60
   61 IGLKVGAAGV RTKPAQRWLL LGVGVDLAIL GYFKYANFGV DSLNAIMTSF GLEPFILTHV 120
  121 LLPIGISFYI FESISYIIDV YRGDTPATRN LIDFAAFVAI FPHLIAGPVL RFKDLVDQFN 180
  181 NRTHTLDKFS EGCTRFMQGF IKKVFIADTL AVVADHCFAL QNPTTGDAWL GALAYTAQLY 240
  241 FDFSGYSDMA IGLGLMMGFR FMENFKQPYI SQSITEFWRR WHISLSTWLR DYLYITLGGN 300
  301 RKGTFNTYRN LFLTMLLGGL WHGANFTYII WGAWHGMWLA IERALGLDTN PQRFNPVKWA 360
  361 FTFLLVVVGW VIFRAENLQV AARMYGAMFS FGDWQLSELN RAQLTGLQVA TLVIAYLTLA 420
  421 FFGLRDFYRN ARPTPKATAV QVNADGSIGL DWTRVMTRAL ILLLFVASIL KLSAQSYSPF 480
  481 LYFQF