YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126358589, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDHPNQVPA EFVPPSVWRN PWHFIAFGFG SGTLPKAPGT WGSLVAIPFI PLWQMLPDWG  60
   61 YWLLLGVSML FGFWLCGKVA NDLRVHDHEG IVWDEIVGMW ITLWLVPEGW QWLLAGFLMF 120
  121 RFFDILKPWP IRWIDRHVHG GVGIMLDDIL AGVFAWLGMQ VLVWAVA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.60
Transmembrane Helix	21	45	0.69
Non-Cytoplasmic	46	58	0.45
Transmembrane Helix	59	80	0.87
Cytoplasmic	81	95	0.46
Transmembrane Helix	96	123	0.73
Non-Cytoplasmic	124	137	0.46
Transmembrane Helix	138	164	0.77
Cytoplasmic	165	167	0.36